Protein ZmHB39
ZmHB39 is a protein in the Homeobox family.
Information
TF Name: ZmHB39
Species: Maize
TF Family: Homeobox
Gene Name(Synonym): KNOX5
Uniprot ID: A0A1D6PDQ1

Protein ZmHB39

ZmHB39 is a protein in the Homeobox family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF00046PF03789PF03790PF03791PF05920
Zm00001eb264910_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d035439DAPseq no logo sequence fimo position
Zm00001d035439DAPseq no logo sequence fimo position
Zm00001d035439ChIPseq no logo sequence fimo position
Zm00001d035439PChIPseq no logo sequence fimo position

Interactions where ZmHB39 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmHB39 is the target  
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There are 60 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb264910_T001 from maize genome v5

Amino Acid Sequence
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MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF03790
PF03791
PF03789
PF00046
PF05920
PF03789
PF03791
PF05920
PF00046
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Nucleotide Sequence
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CTGGCAGGCACTGCCTCCATCATCC...

GRMZM5G832409_T01 from maize genome v3


Related TFome: pUT4263

Amino Acid Sequence
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MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

Nucleotide Sequence
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CACTGCCTCCATCATCCTCTGACTC...

Zm00001d035439_T001 from maize genome v4

Amino Acid Sequence
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MEDLYSIHPGISRHGAAATSEASGVAGGPGSPPPPPPPAADLTELVKAQIAGHPRYPSLLSAYIDCRKVGAPSEVATLLE
EIGRERCAAASAGGEVVGMDPELDEFMETYCRLLERYKEELSRPFDEAASFLSSVRTQLSSLCGGAASLSDEMVESSEDE
PCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKV
RLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

Nucleotide Sequence
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CTCTGACTCAGAGAGAGAGAGAGCA...

Zm00001d035439_T002 from maize genome v4

Amino Acid Sequence
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MVESSEDEPCSGDTDATTDPGQEHSSRLADRELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWP
YPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGGVSGSSSGTTLYFDTGTIGP

Nucleotide Sequence
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ATGACCCACTTTGCCCCCCCGGCTC...

Zm00001eb264920_T001 from maize genome v5

Amino Acid Sequence
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MVIGVTDQINFCTTFLSYKRLILKEYSNLSNGMVLQHEMVTNIQFSRILMQTKTLVFAFLLADNNKNAICSLDQGNNFFL
SWIWYYFCTSGILVYHKRNH

Nucleotide Sequence
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CATATACATATGTTAAATTTTAGGG...


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